Yeah you're right.
subie connector, read right to left 1, 2, 3.
pin 1 is for cyl numbers 1 and 2
pin 2 is "12v signal in"
pin 3 is for cyl numbers 3 and 4
The MSD connector reads left to right tho, opposite to the subie one.
I think the wires colors are the same as mine. Here's a pic over on sl-i.net
I thought I got it right the first time, but first start up on my car it backfired! So try the wiring thats in the pic. If it's not right switch around the 2 outer wires, then it should work. The center wire on the subie connector always goes the center wire on the msd connector.