Did you tell txs that you took out your maf? I don't think you can just remove the maf, run the car and expect it to run normally. The ecu determines the fueling of the car by the maf reading. That's why you were having the fueling problems b4, and probably why you're having problems now. It would probably be a good idea to put the stock intake back on, the maf back in, reset the ecu, and see what happens. That's just my opinion though.
peace