did you go to cobb's website and post this on their accessport forums? from what i read about my sti accessport. i'm supposed to put the ecu back in stock mode then reload my base and realtime stage maps when i'm finished. that way when they scan the obdII port, it reads the ecu in stock form.
definitely post your response from cobb since i'll be interested, especially being in california where emissions control is our state motto.