Sorry for the post, after a few hours, I figured it out. Because the lights where working sometimes I thought it was a grounding issue. I was wrong. It was a bad connection with the brake light switch. When I would press the clutch or move the clutch switch wire it would cause the connecter to the brake switch (same wire loom) to move enough that it would sometimes have a connection. The 06 has 4 connectors on the brake switch, one which appeared to be connected to the accessory. If you are holding the connector with the release tab facing up and you are looking into the connector, the upper right is power, the lower right is accessory related, and the lower left is the brakes. I did not take the time to figure out the upper left. If I was not supposed to reply to my own post, sorry, and I hope this helps somebody sometime.